This release contains mostly code improvement, minor bug fixes, small user enhancements and other miscellanies maintenance.
- Command line: Add parsing of transfac PWM files
- Command line: Add reverse and complement transformations
- Improve clustal file parsing
- Currently compatible with python 2.5, 2.6 and 2.7
- Deprecate support for python 2.3 and 2.4
- Migrate corebio library into weblogo for easier maintenance and development.
- Add new annotate option for custom annotation line
Miscellaneous minor bug fixes and refactoring.
Incorporates bug fixes and feedback from Gavin Crooks, John Gilman, Kevin Schutz and Perry Evan.
- WebLogo 3.1 web-sever
- WebLogo 3.1 code